Shiny Apps Error in R Studio -
my shiny apps had been running fine until last week. trying run apps today , getting errors in of them : below error , sessioninfo.
i using shinydashboard , other shiny libraries render app.
error in withreactivedomain(shinysession, { : no handler registered for type file1:shiny.file sessioninfo() r version 3.3.1 (2016-06-21) platform: x86_64-apple-darwin13.4.0 (64-bit) running under: os x 10.10.1 (yosemite) locale: [1] en_us.utf-8/en_us.utf-8/en_us.utf-8/c/en_us.utf-8/en_us.utf-8 attached base packages: [1] parallel stats4 grid stats graphics grdevices utils datasets methods base other attached packages: [1] locfit_1.5-9.1 ggbiplot_0.55 scales_0.4.0 [4] chimera_1.14.0 homo.sapiens_1.3.1 org.hs.eg.db_3.3.0 [7] go.db_3.3.0 organismdbi_1.14.1 txdb.hsapiens.ucsc.hg19.knowngene_3.2.2 [10] genomicfeatures_1.24.5 bsgenome.hsapiens.ucsc.hg19_1.4.0 bsgenome_1.40.1 [13] rtracklayer_1.32.2 annotationdbi_1.34.4 genomicalignments_1.8.4 [16] rsamtools_1.24.0 biostrings_2.40.2 xvector_0.12.1 [19] biocinstaller_1.22.3 gtrack_0.1.0 gutils_0.2.0 [22] data.table_1.9.6 stringr_1.1.0 devtools_1.12.0 [25] reshape_0.8.5 deseq2_1.12.4 summarizedexperiment_1.2.3 [28] biobase_2.32.0 genomicranges_1.24.3 genomeinfodb_1.8.7 [31] iranges_2.6.1 s4vectors_0.10.3 biocgenerics_0.18.0 [34] xlsx_0.5.7 xlsxjars_0.6.1 rjava_0.9-8 [37] shinydashboard_0.5.3 dt_0.2 shiny_0.14.1 [40] ggplot2_2.1.0 sva_3.20.0 genefilter_1.54.2 [43] mgcv_1.8-15 nlme_3.1-128 matrixstats_0.51.0 [46] pvclust_2.0-0 gplots_3.0.1 reshape2_1.4.1 [49] plyr_1.8.4 complexheatmap_1.11.7 loaded via namespace (and not attached): [1] colorspace_1.2-7 rjson_0.2.15 class_7.3-14 modeltools_0.2-21 mclust_5.2 [6] circlize_0.3.9 globaloptions_0.0.10 flexmix_2.3-13 mvtnorm_1.0-5 splines_3.3.1 [11] robustbase_0.92-6 geneplotter_1.50.0 formula_1.2-1 jsonlite_1.1 annotate_1.50.1 [16] cluster_2.0.5 kernlab_0.9-25 graph_1.50.0 httr_1.2.1 matrix_1.2-7.1 [21] acepack_1.3-3.3 htmltools_0.3.5 tools_3.3.1 gtable_0.2.0 rcpp_0.12.7 [26] trimcluster_0.1-2 gdata_2.17.0 fpc_2.1-10 mime_0.5 gtools_3.5.0 [31] xml_3.98-1.4 dendextend_1.3.0 deoptimr_1.0-6 zlibbioc_1.18.0 mass_7.3-45 [36] rbgl_1.48.1 rcolorbrewer_1.1-2 yaml_2.1.13 curl_2.1 memoise_1.0.0 [41] gridextra_2.2.1 biomart_2.28.0 rpart_4.1-10 latticeextra_0.6-28 stringi_1.1.2 [46] rsqlite_1.0.0 catools_1.17.1 biocparallel_1.6.6 shape_1.4.2 chron_2.3-47 [51] prabclus_2.2-6 bitops_1.0-6 lattice_0.20-34 htmlwidgets_0.7 labeling_0.3 [56] magrittr_1.5 r6_2.2.0 hmisc_3.17-4 dbi_0.5-1 whisker_0.3-2 [61] foreign_0.8-67 withr_1.0.2 survival_2.39-5 rcurl_1.95-4.8 nnet_7.3-12 [66] kernsmooth_2.23-15 getoptlong_0.1.5 git2r_0.15.0 digest_0.6.10 diptest_0.75-7 [71] xtable_1.8-2 httpuv_1.3.3 munsell_0.4.3 any idea,what be?
thanks,
ron
shiny version 0.14.2 published last week (along new versions of r , rstudio). maybe broke in code. 1 way protect against use packrat package locks in version of r package code not changed new package. can test code against upgrade , troubleshoot before using new version.
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