r - unknown namespace directive during installation of biocDatasets -
i'm trying install package "biocdatasets" bioconductor. unfortunately, can't bioclite, because:
> bioclite("biocdatasets") bioc_mirror: http://bioconductor.org using bioconductor version 3.0 (biocinstaller 1.16.5), r version 3.2.2. installing package(s) 'biocdatasets' warning message: package ‘biocdatasets’ not available (for r version 3.2.2)
so, decided install source. , that's happens:
> install.packages("biocdatasets_1.6.0.tar.gz") installing package ‘/nfs/home/dzenkova/r/x86_64-pc-linux-gnu-library/3.2’ (as ‘lib’ unspecified) inferring 'repos = null' 'pkgs' * installing *source* package ‘biocdatasets’ ... ** r ** inst ** preparing package lazy loading error : unknown namespace directive: importmethodfrom("biostrings", "nchar") error: lazy loading failed package ‘biocdatasets’ * removing ‘/nfs/home/dzenkova/r/x86_64-pc-linux-gnu-library/3.2/biocdatasets’ warning message: in install.packages("biocdatasets_1.6.0.tar.gz") : installation of package ‘biocdatasets_1.6.0.tar.gz’ had non-zero exit status
is there can fix it? doubt it's r version related, because have tried r 3.3.1 , nothing changes.
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