r - RStudio can't find installed packages -
i updated osx sierra , rstudio can't find packages. seems looking in right place (deseq2 nr. 30 on list):
> library(deseq2) error in library(deseq2) : there no package called ‘deseq2’ > .libpaths() [1] "/library/frameworks/r.framework/versions/3.3/resources/library" > list.files("/library/frameworks/r.framework/versions/3.3/resources/library") [1] "acepack" "airway" "annotate" "annotationdbi" "assertthat" "base" [7] "base64enc" "bh" "biobase" "biocgenerics" "biocinstaller" "biocparallel" [13] "biocstyle" "biomart" "biostrings" "bitops" "boot" "catools" [19] "chron" "class" "cluster" "codetools" "colorspace" "compiler" [25] "corpcor" "curl" "data.table" "datasets" "dbi" "deseq2" [31] "dichromat" "digest" "doparallel" "dplyr" "edger" "ellipse" [37] "evaluate" "file86d32aa98203" "foreach" "foreign" "formatr" "formula" [43] "futile.logger" "futile.options" "gdata" "genefilter" "geneplotter" "genomeinfodb" [49] "genomicalignments" "genomicfeatures" "genomicranges" "ggplot2" "gplots" "graphics" [55] "grdevices" "grid" "gridbase" "gridextra" "gtable" "gtools" [61] "highr" "hmisc" "htmltable" "htmltools" "htmlwidgets" "httpuv" [67] "httr" "igraph" "iranges" "irlba" "iterators" "jsonlite" [73] "kernsmooth" "knitr" "labeling" "lambda.r" "lattice" "latticeextra" [79] "lazyeval" "limma" "locfit" "magrittr" "markdown" "mass" [85] "matrix" "methods" "mgcv" "mime" "mixomics" "munsell" [91] "nlme" "nmf" "nnet" "openssl" "parallel" "pheatmap" [97] "pkgmaker" "plyr" "r.cache" "r.methodss3" "r.oo" "r.utils" [103] "r6" "rafalib" "rcolorbrewer" "rcpp" "rcpparmadillo" "rcurl" [109] "registry" "repmis" "reshape" "reshape2" "rgl" "rmarkdown" [115] "rngtools" "rpart" "rsamtools" "rsqlite" "rtracklayer" "s4vectors" [121] "scales" "shiny" "snow" "sourcetools" "spatial" "splines" [127] "stats" "stats4" "stringi" "stringr" "summarizedexperiment" "survival" [133] "tcltk" "tibble" "tidyr" "tools" "translations" "utils" [139] "viridis" "xml" "xtable" "xvector" "yaml" "zlibbioc"
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